The anatomy laboratory studies the macroscopic structure of the human body from head to toe. The anatomy laboratory is equipped with several teaching aids (mannequins), including: muscle system mannequins, ear, eyeball, brain, urinary system, circulatory system, nervous system, and full-body human skeleton mannequins.
The anatomy laboratory is separate from the Faculty of Medicine and Health lecture building. The laboratory is located opposite the PPNS (Surabaya State Shipping Polytechnic) building. This laboratory consists of a cadaver storage room and an anatomy practicum room which is equipped with a cadaver storage cupboard, cadaver examination table, formalin pool, safety shower, and decomposition area. The anatomy practicum room can accommodate up to 40 students.